Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    26   0.22 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   8.3  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   8.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   8.3  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 171 YNGCXSLQTETHYCFTAEIGGCMMIGVSLSSVLYFYIILIFTGRMT 308
           +N   +L  E + CF  +I G + +GV  ++   F +++  +G  T
Sbjct: 216 HNKICNLIDEFNECFGLQILGILFVGVIYTTYTIFLLLIFGSGSAT 261



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -1

Query: 176 VVTILETLELISQG---GWHIYVVDV 108
           V+  L + +L + G   GWH Y+ DV
Sbjct: 139 VLAFLYSFDLFANGITFGWHTYIFDV 164


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +3

Query: 90  WLLXPIDIHNVNVPPTLRYKF*SLKYSYNGCXSLQTETHYCFTAEIGGCMMIGVSLSSVL 269
           WL  P  + N   P +LR+K  ++ + +    +L   + Y     I G M + V+++  +
Sbjct: 7   WLTPPHSLGNTVTPVSLRFKLYTIVHIFI-IIALYAHSSYGRENFIYGSMNMTVAITDKI 65

Query: 270 YFYIILIF 293
             +++  F
Sbjct: 66  ANFMLTFF 73



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 565 FVYRVHHDSRLMVHYEIVPLKYFF 494
           F Y V + +  ++ + ++P+K FF
Sbjct: 152 FTYYVCNTTIFLIFHSVLPIKRFF 175


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 458 RWVVSSSTHLSNKEVLERNNFVMYH 532
           RW   ++T    +E+ E +NFV  H
Sbjct: 292 RWYCQTATMEEKQELYEFSNFVSQH 316


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 586 TRKQKAEFVYRVHHDSRLMVH 524
           T K+KA+F Y V +D   M H
Sbjct: 419 TLKEKADFQYYVSYDFYKMNH 439


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 188 GGAAVVTILETLELISQGGWHI 123
           G A ++   E +EL  +GGW +
Sbjct: 292 GEAGMLGYNEIVELQKEGGWKV 313


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 212 LHGRNRRVYDDRCIIIFCVVLLYYT----YFYWS 301
           L  RNR ++    ++IF + L++ T    Y  WS
Sbjct: 121 LEKRNRHIFRTSVLLIFVMHLMFDTLGGLYSTWS 154


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 212 LHGRNRRVYDDRCIIIFCVVLLYYT----YFYWS 301
           L  RNR ++    ++IF + L++ T    Y  WS
Sbjct: 121 LEKRNRHIFRTSVLLIFVMHLMFDTLGGLYSTWS 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,747
Number of Sequences: 336
Number of extensions: 3054
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)