Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    30   0.23 
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.41 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   1.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.9  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 481 GGRAHDPPVVKWLQKPIDIYNVNAA-VQFETR 389
           GG  HDP  V WL +P DIY+     VQ ET+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRKVNVQIETQ 265


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 245 YHHTPAYFCREAVMRFGLKGGAAVVTILETLELISQGG 132
           Y   P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 86  YFKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 553 PYRQTLPFAYELLNLNDSKGLH 618
           P  +TLPF+  LLN+ D + LH
Sbjct: 90  PITRTLPFSTGLLNIKDEEELH 111


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 472 AHDPPVVKWLQKPIDIYNVNAAVQF-ETRVLRSQFLQINGCF 350
           A  PP +K    P+DI N++AA +  +  +L  + LQ++  +
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLKKIDLLLEEILQLDSAY 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,449
Number of Sequences: 5004
Number of extensions: 48180
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)