Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0355 + 28657833-28660665,28660762-28661126                       29   3.0  
01_06_1749 - 39636951-39638102                                         29   3.9  
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    28   5.2  

>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 53  GGWTSS*PT--WC*VVTGAHRHPQRKCATHL 139
           G WT++ P   W  V  G HRHP R  A  L
Sbjct: 54  GNWTAAAPYCGWLGVTCGGHRHPLRVTALEL 84


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 160 SSIVTTAAPPFKPKRITA 213
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
            3384640-3384709,3385878-3386002,3387128-3387268,
            3387362-3387519,3387644-3387803,3390136-3390213,
            3390326-3390385,3390473-3390528,3391886-3392090,
            3394107-3394192,3394296-3394406,3394536-3394607,
            3395453-3395538,3395730-3395878,3396107-3396250,
            3396335-3396442,3396997-3397027,3397609-3397713,
            3398283-3398407,3398807-3398950,3399073-3399177,
            3400748-3400799,3401549-3401696,3401936-3402130,
            3402404-3402647,3403152-3403259,3403887-3404034,
            3405467-3405525,3405876-3405945,3407008-3407333,
            3407666-3409204,3410526-3410733,3410870-3410906,
            3411024-3411072,3411143-3411271
          Length = 2025

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 607  WNHSD*ATRKQKAEFVYRVHHDSRLM 530
            WNHSD  T K+ AE +  + H + LM
Sbjct: 1323 WNHSDWKTYKEVAEKMLDIMHKANLM 1348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,570
Number of Sequences: 37544
Number of extensions: 322253
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)