Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  31   0.57 
SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)          29   2.3  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_25083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_39556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_52431| Best HMM Match : C_tripleX (HMM E-Value=1.8e-05)             27   9.3  

>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 469  HDPPVVKWLQKPIDIYNVNAAVQFETRVLRSQFLQINGCFTFQTETRYCGAS 314
            H+    ++++  ID Y++ A     T    S  +    C+TFQ +TRY GA+
Sbjct: 1015 HEIDAYRYIRHGIDPYSLGAESVNTTTGNLSAAIAREACYTFQHDTRYKGAA 1066


>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
          Length = 1286

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 562  VYRVHHDSRLMVHYEIVPLKYFFIA*MGGRAHDPPVVKWLQKPIDIYN 419
            +YR++ +   +V ++    ++F    +    ++  V KW QKPI IY+
Sbjct: 942  LYRLYFEKLFLVQFQSF-FRFFIALELYTHQYEDIVYKWSQKPISIYD 988


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = -1

Query: 563 CL*GTS*LAFNGTLRNCSSQVLLYCLDGWTSSRPTCS*VVTEAHRYLQRKCGCPI*DKSS 384
           C  GT+    N    N        C++G+T     C  ++T++   LQ+    P    + 
Sbjct: 708 CFEGTANCDINAECTNSVGSYNCQCMEGYTGDGKNCQAIITKSPTTLQQTTVAPESTAAP 767

Query: 383 KVSVLTD 363
           + SV  D
Sbjct: 768 ETSVAPD 774


>SB_25083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 373 FLQINGCFTFQTETRYCGAS 314
           FL ++ CF  Q E  YCG S
Sbjct: 40  FLSLSSCFNTQAEPAYCGLS 59


>SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 539 AFNGTLRNCSSQVLLYCLDGWTSS 468
           A +  +R CS  V+LY L  W SS
Sbjct: 453 AVSAVVRQCSKLVILYTLSNWISS 476


>SB_39556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 227 RRVYDDRCIIIFCVVLLYYTYFYW----SYDVW*GSAVTRFGLKGETAV 361
           R  Y  R  I+ C+ +    + +W    +YD+W       FG+ GE A+
Sbjct: 253 RLKYQQRRAILMCIFMFLINFAFWLPYFTYDLW--QTHDGFGIIGEYAI 299


>SB_52431| Best HMM Match : C_tripleX (HMM E-Value=1.8e-05)
          Length = 471

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 422 QRKCGCPI*DKSSKVSVLTDQRLFHLSNRNALLRSLTRRHTTS 294
           ++   CPI   +S+  ++    LF+L+N+    RS    H  S
Sbjct: 241 EQSASCPICSSTSRTKIIRPDLLFYLTNKVHQARSALLTHEQS 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,093,999
Number of Sequences: 59808
Number of extensions: 384256
Number of successful extensions: 712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)