Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   4.7  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   4.7  

>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 248 CIIIFCVVLLYYTYFYW 298
           CII+F +++L Y Y YW
Sbjct: 353 CIIMFMIIMLLYVYIYW 369


>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 221 RNRRV---YDDRCIIIFCVVLLYYTYFYWSY 304
           R RRV    D+RC I+F ++ L +   YWS+
Sbjct: 459 RGRRVAQRIDERCRIVFPMIFLLFNVAYWSF 489


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 159  LKYSYNGCXSLQTETHYCFTAEIGGCMMIGVSLSSVLYFYIILI 290
            L+Y  +GC +L  ET  C  AE+    + G++  SVL+   +L+
Sbjct: 2116 LQYICDGCIALNVETLMCLLAEMTERGITGLN-GSVLHMLFLLL 2158


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 159  LKYSYNGCXSLQTETHYCFTAEIGGCMMIGVSLSSVLYFYIILI 290
            L+Y  +GC +L  ET  C  AE+    + G++  SVL+   +L+
Sbjct: 2144 LQYICDGCIALNVETLMCLLAEMTERGITGLN-GSVLHMLFLLL 2186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,708
Number of Sequences: 27780
Number of extensions: 275943
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)