Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   7.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 239 DDRCIIIFCVVLLYYTYFYWSYDVW 313
           D R  I+F V  + +   YWS+ +W
Sbjct: 445 DRRSRIVFPVAFIIFNILYWSF-IW 468


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 572 GRVCL*GTS*LAFNGTLRNCSSQVLLYCLDGWTSSRPTCS*VVTEAHR 429
           G+VCL     L  +GT      ++LL+  D       +   + +EAHR
Sbjct: 42  GQVCLGSVMQLPIHGTEPRSKEEILLHAKDFLEQYFSSIRRLNSEAHR 89


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 383 KVSVLTDQRLFHLSNRNALLRSLTR 309
           K+S  T  R  HL  R  L  S+TR
Sbjct: 612 KISPFTADRDLHLGERTTLTCSVTR 636


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 245 RCIIIFCVVLLYYTYF 292
           RCI +F  V+L  +YF
Sbjct: 6   RCIYLFLSVILITSYF 21


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 159 DFRTYISRWVAHLRCG 112
           DF+  I RWVA++  G
Sbjct: 328 DFKQLIDRWVANVPNG 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,121
Number of Sequences: 438
Number of extensions: 3307
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)