Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger) fa...    30   1.4  
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa...    27   7.6  

>At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 536 FNGTLRNCSSQVLLYCLDGWTSSRPTC 456
           F   LRNC     + C+D W SS  TC
Sbjct: 150 FGRKLRNCGHGFHVECIDMWLSSHSTC 176


>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 132

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 524 LRNCSSQVLLYCLDGWTSSRPTC 456
           LRNC     L C+D W + +  C
Sbjct: 96  LRNCGHVFHLLCIDSWLTQKQNC 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,424
Number of Sequences: 28952
Number of extensions: 259322
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)