Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0112
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IHS0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_Q8IBN6 Cluster: Putative uncharacterized protein MAL7P1...    33   7.7  
UniRef50_Q61LP6 Cluster: Putative uncharacterized protein CBG088...    33   7.7  

>UniRef50_Q8IHS0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 218

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +2

Query: 113 KFLLFHFYVVFCVTVRNMHQLLLSNRIFTFHTV**HNDNKKSFL*NNETSHNIRS 277
           +FL +H+ ++FC+ ++N+     S ++  +H    H++N  + L     S N+++
Sbjct: 3   RFLTYHYILIFCIIIKNVFSFQPSQKVRIYHVNKIHSNNSIN-LNKTNISSNVKT 56


>UniRef50_Q8IBN6 Cluster: Putative uncharacterized protein
           MAL7P1.115; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL7P1.115 - Plasmodium
           falciparum (isolate 3D7)
          Length = 779

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 260 SFHYFKENFFYYHCVIILCEM 198
           S ++ KE FFY++C++I+CE+
Sbjct: 192 SNYHIKEFFFYFYCILIICEI 212


>UniRef50_Q61LP6 Cluster: Putative uncharacterized protein CBG08815;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG08815 - Caenorhabditis
           briggsae
          Length = 197

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 66  TMFAGYYTCF*NRVKQNSFYFIFTSFFVSQ*EICISFYC 182
           T F G+ TC     K  S + +FT FF+S   IC  + C
Sbjct: 95  TSFCGFLTC---HSKDMSIFVVFTIFFISMFLICFCYIC 130


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,066,721
Number of Sequences: 1657284
Number of extensions: 9448749
Number of successful extensions: 19610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19517
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)