Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0112
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z81130-1|CAB03413.1|  168|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 549 FWVKLRKLYNLAYY--FKYNSCIHNCV*HFILYEYSDAILYKWR 424
           F+   + L  L Y   F++  C++NCV H+  +   D  L+ W+
Sbjct: 427 FFNATKSLLMLGYKPNFEFKECVNNCVKHYREFRKKDVRLFSWQ 470


>Z81130-1|CAB03413.1|  168|Caenorhabditis elegans Hypothetical
           protein T23G11.1 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 33  NSVLRSQGHLLTMFA-GYYTCF*NRVKQNSFYFIFTSFFVSQ*EICISFYCRTAFSHF 203
           NS LRS+G   T  A    T   N          FTS  VS   + ISFY  T  S F
Sbjct: 32  NSTLRSRGKASTRTALSTATAVENGPSYEKMISAFTSVAVSYFVLAISFYIETTVSLF 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,271,347
Number of Sequences: 27780
Number of extensions: 256661
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)