Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0112
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.3  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 397 QLK*YIYNNIFLHILFTYIFKV 332
           +LK Y +NN  LHIL+T   KV
Sbjct: 90  KLKIYKWNNQILHILWTSYKKV 111


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 397 QLK*YIYNNIFLHILFTYIFKV 332
           +LK Y +NN  LHIL+T   KV
Sbjct: 73  KLKIYKWNNQILHILWTSYKKV 94


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 371 IIINILFQLYVRFLLFCNR-HLYKMAS-EYSYSIKC 472
           ++IN+L  LY +F  FC +  +YK+ +   +Y + C
Sbjct: 511 MVINMLQNLYEQFDSFCGQLDVYKVETIGDAYCVAC 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,370
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)