Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0112
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13280.1 68417.m02077 terpene synthase/cyclase family protein...    30   1.1  
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s...    29   3.5  
At4g38560.1 68417.m05459 expressed protein                             28   6.1  

>At4g13280.1 68417.m02077 terpene synthase/cyclase family protein
           predicted protein, Arabidopsis thaliana
          Length = 535

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 134 KNEIKGILFHSISKTGIVTGKHREQMTLTAQNRILDHFG 18
           +NEIK IL H+  K   +TG  ++  T++   R+   +G
Sbjct: 83  ENEIKNILEHAFRKIDDITGDEKDLSTISIMFRVFRTYG 121


>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
           splice sites at intron 6
          Length = 624

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -3

Query: 146 KKRRKNEIKGILFHSISKTGIVTGKHRE--QMTLTAQNRILDHFGGEG 9
           KK++ N+++ IL +  S + I+TG   +  + T   +NR L+++GG G
Sbjct: 57  KKKKVNQVETILENGDSHSTIITGSSGDFGETTTMFENR-LNYYGGGG 103


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   ASPSPPK*SKIRFCAVKVICSRCLPVTIPVFEIE*NKIPFISF 132
           +S   PK  K RF   K  CS+  P+T PV  I  N+ P  S+
Sbjct: 28  SSGDVPKKEKKRFGFGKPACSKETPLTSPVRVIAGNRSPLPSY 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,594
Number of Sequences: 28952
Number of extensions: 209497
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)