Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0111
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0704 - 31064996-31065214,31065306-31065466,31065583-310656...    29   3.3  

>02_05_0704 -
           31064996-31065214,31065306-31065466,31065583-31065660,
           31066560-31066651,31066775-31066833,31066924-31067010,
           31067118-31067214,31067311-31067495,31067593-31067665,
           31067725-31067805,31067948-31068048,31068133-31068246,
           31068391-31068488,31069789-31069915
          Length = 523

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 368 LFFSL*GCLEEILSAIMPPIYVTVCYLFYTYAYSVHV 258
           +FFS+ G    + ++I PPI+  +  +F+ Y  S  V
Sbjct: 366 IFFSILGKFGAVFASIPPPIFAALYCIFFAYVGSAGV 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,122
Number of Sequences: 37544
Number of extensions: 235426
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)