Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0111
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.9  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 252 NKELYYYNYSI 220
           NK+LYY NY I
Sbjct: 101 NKKLYYKNYII 111


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 252 NKELYYYNYSI 220
           NK+LYY NY I
Sbjct: 112 NKKLYYKNYII 122


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 252 NKELYYYNYSI 220
           NK+LYY NY I
Sbjct: 342 NKKLYYKNYII 352


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 252 NKELYYYNYSI 220
           NK+LYY NY I
Sbjct: 337 NKKLYYKNYII 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,133
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)