Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0109
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.23 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.92 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.7  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   4.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +2

Query: 260 HIISALTLISQIPSKV---HPSHFRTPPPHITVYF 355
           HI+S +   SQIPS+V   + ++F    PH+  +F
Sbjct: 327 HILSIVNTCSQIPSEVEDKYTTYFLNTYPHLFNFF 361


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 610 IHLMVYTYVYYFFSIILNFT 551
           +HL+    +YYF+S  + FT
Sbjct: 204 LHLLFLPCIYYFYSAFIIFT 223



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 610 IHLMVYTYVYYFFSIIL 560
           +H ++ TY +Y+  IIL
Sbjct: 94  VHFLLCTYYFYYAFIIL 110



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 610 IHLMVYTYVYYFFSIILNFT 551
           +HL+    +Y+FF   + FT
Sbjct: 158 VHLLFLLCIYHFFCAFIIFT 177



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 610 IHLMVYTYVYYFFSIILNF 554
           +HL++   +YYF+ + L F
Sbjct: 250 VHLLLLVCIYYFYYMHLLF 268


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 245 PFKLPHIISALTLISQIPSKVHPSH 319
           PFKLP+    LT   +I   + P H
Sbjct: 105 PFKLPYFWKMLTGFGKIEQVLPPHH 129


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 382 HVVE*ILGMKVDGNVR 335
           H++   +G++ DGNVR
Sbjct: 55  HIIYSFVGLQADGNVR 70


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 260 HIISALTLISQIPSKVHPSHFRTPPPHI 343
           ++ S  ++I +  +KVH +  R  PP +
Sbjct: 61  YVESLASIIDEAATKVHGTTVRVRPPKV 88


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 260 HIISALTLISQIPSKVHPSHFRTPPPHI 343
           ++ S  ++I +  +KVH +  R  PP +
Sbjct: 375 YVESLASIIDEAATKVHGTTVRVRPPKV 402


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 260 HIISALTLISQIPSKVHPSHFRTPPPHI 343
           ++ S  ++I +  +KVH +  R  PP +
Sbjct: 608 YVESLASIIDEAATKVHGTTVRVRPPKV 635


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 260 HIISALTLISQIPSKVHPSHFRTPPPHI 343
           ++ S  ++I +  +KVH +  R  PP +
Sbjct: 608 YVESLASIIDEAATKVHGTTVRVRPPKV 635


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 379 HDHPLYSL*YLPEYMKQMTSYHS*Y*WL 462
           H+ PLYS     +Y KQ+   H+   W+
Sbjct: 291 HNAPLYSPSSDSQYQKQLNVEHAANLWV 318


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 284 ISQIPSKVHPSHFRTPPP 337
           I +  S VH +H R  PP
Sbjct: 644 IDEAASDVHQTHMRIRPP 661


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 284 ISQIPSKVHPSHFRTPPP 337
           I +  S VH +H R  PP
Sbjct: 644 IDEAASDVHQTHMRIRPP 661


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 284 ISQIPSKVHPSHFRTPPP 337
           I +  S VH +H R  PP
Sbjct: 644 IDEAASDVHQTHMRIRPP 661


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 284 ISQIPSKVHPSHFRTPPP 337
           I +  S VH +H R  PP
Sbjct: 644 IDEAASDVHQTHMRIRPP 661


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,059
Number of Sequences: 336
Number of extensions: 2927
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)