Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0109
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   4.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   5.2  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.9  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   9.1  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 557 LYDYSLQPIAQCTSPPLNMCDRVRDA 480
           LYDY  Q  AQ T+PP+   D +R+A
Sbjct: 574 LYDYFRQLFAQVTNPPI---DPIREA 596


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 289 ANPIQGASKSF*DAPSSHYRLL 354
           +N I G  KSF D  S HYRLL
Sbjct: 151 SNNIYGGYKSFEDYLSIHYRLL 172


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 593 YLRVLFFLNHFKLYDYSLQPIAQCTSPPLNMC 498
           +L    F++H+KL D+S + +  C    L +C
Sbjct: 17  FLSCCAFMSHWKLKDFSFRFLRMCGERSLVVC 48


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 560 KLYDYSLQP--IAQCTSPPLNMCDRVRDAESVCSGSH 456
           K+YD   Q   + +  +PPL   D ++D   VC G H
Sbjct: 706 KIYDAFPQTAVLRRHAAPPLTNFDSLQDILRVCKGMH 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,318
Number of Sequences: 5004
Number of extensions: 48032
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)