Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0109
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    28   5.4  
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121     27   9.4  
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    27   9.4  

>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
 Frame = +2

Query: 275 LTLISQIPSKVHPSHFRT-----PPPHITVYF-HTQDL--FDHMIILSTLS 403
           L LIS +PS  +PS  RT     PPPH+ ++  H++ L  F H ++  + S
Sbjct: 86  LALISLLPSPPNPSRSRTAAAAPPPPHVPLHADHSRLLSRFRHAVLPESAS 136


>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
          Length = 499

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 223 SAHKLSFSIQAT-TYHLCTHPNLANPIQGASKSF*DA-PSSHYRLLSYPGSIRPHDH 387
           S+ KL+F++ A  T      P  A  + GAS       P S  +LL Y   I PHDH
Sbjct: 55  SSEKLAFNLPAVFTIGPKITPAPAPEVDGASNQRRVLMPESEEKLLLYAKLIAPHDH 111


>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 554 YDYSLQPIAQCTSPPLNMCDRVRDAESVCSGS 459
           + ++  P   C+S    + DR +D + +CSGS
Sbjct: 402 FSFTSPPFLGCSSLRFLLLDRCKDKDKLCSGS 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,667
Number of Sequences: 37544
Number of extensions: 315804
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)