Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0109
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein...    28   6.4  

>Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical
           protein R10E11.4 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +2

Query: 221 DRRTSYLFPFKLPHIISALTLISQIPSKVHPSHFRTPPPHITVYFHTQDLFDHMIILSTL 400
           D  T Y+ P  L      L +I  +P +      R   PH++ + H Q++  H++I++  
Sbjct: 35  DLMTDYVDPRPLQTSYHKLCVI--VPYRDRLEELREFSPHMSKFLHNQNVSHHILIINQT 92

Query: 401 SNICLN 418
             +  N
Sbjct: 93  DPLRFN 98


>AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein
           protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +2

Query: 221 DRRTSYLFPFKLPHIISALTLISQIPSKVHPSHFRTPPPHITVYFHTQDLFDHMIILSTL 400
           D  T Y+ P  L      L +I  +P +      R   PH++ + H Q++  H++I++  
Sbjct: 35  DLMTDYVDPRPLQTSYHKLCVI--VPYRDRLEELREFSPHMSKFLHNQNVSHHILIINQT 92

Query: 401 SNICLN 418
             +  N
Sbjct: 93  DPLRFN 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,496
Number of Sequences: 27780
Number of extensions: 271406
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)