Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0109
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...    32   0.37 
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...    32   0.37 
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ...    27   7.9  
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do...    27   7.9  
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,...    27   7.9  

>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 269 SALTLISQIPSKVHPSHFRTPPPHITVYFHTQDLFDHMI 385
           S+ + I  +P+   P+    PPPH+  Y H  ++  + I
Sbjct: 27  SSFSAIDSVPASASPTALSPPPPHLMPYDHAAEIIKNKI 65


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 269 SALTLISQIPSKVHPSHFRTPPPHITVYFHTQDLFDHMI 385
           S+ + I  +P+   P+    PPPH+  Y H  ++  + I
Sbjct: 27  SSFSAIDSVPASASPTALSPPPPHLMPYDHAAEIIKNKI 65


>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 210 LLCGIGAQVIFFHSSYHISSLHSP*SRKSHPRCIQVILGRPLLTLPSTFIPR 365
           + C I  Q I +HSS H  S+H   + K  P  I      P    P TF PR
Sbjct: 89  ICCDISFQDIIYHSSNHKLSMHPVCAMKPVPIFIDHTKRHP---HPLTFSPR 137


>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 1013

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -3

Query: 478 SLCVLEATNISCDMMSFVSYIQ-----ADIRESREDDHVVE*ILGMKVDGNVRRGRPKMT 314
           SLC+  +       MS + Y++     +D+R+ R  D V E ++G+KV  N R+ + K+T
Sbjct: 353 SLCLDYSVLAFRKAMSVIEYLKLYFNWSDMRQFRRRD-VEEELIGLKVTVNHRKNKQKLT 411


>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
            putative similar to MgATP-energized glutathione
            S-conjugate pump [Arabidopsis thaliana] GI:2909781;
            contains Pfam profiles PF00005: ABC transporter, PF00664:
            ABC transporter transmembrane region
          Length = 1495

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 204  IYLLCGIGAQVIFFHSSYHI--SSLHSP*SRKSHPRCIQVILGRPLL 338
            +Y L G G   + F +S+ +  SSLH+  +R+ H   +  IL  P+L
Sbjct: 955  VYALLGFGQVAVTFTNSFWLITSSLHA--ARRLHDAMLSSILRAPML 999


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,577
Number of Sequences: 28952
Number of extensions: 250434
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)