Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0108
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.10 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.23 
UniRef50_Q9XHE1 Cluster: CENPCA protein; n=7; Andropogoneae|Rep:...    34   3.8  
UniRef50_Q8IB93 Cluster: Putative uncharacterized protein MAL8P1...    34   3.8  
UniRef50_Q751C6 Cluster: AGL220Wp; n=3; Saccharomycetales|Rep: A...    33   5.0  
UniRef50_Q4UD46 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  
UniRef50_A0D3E3 Cluster: Chromosome undetermined scaffold_36, wh...    33   6.6  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 102 CPQSFSPDFLSGSRFRSGVRFCEDWLLLGSV 194
           CP SFSPD LSGSRFR+G  +  + L LG++
Sbjct: 395 CPLSFSPDLLSGSRFRTGAEY--EMLGLGTI 423


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 23/42 (54%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 105 PQSFSPDFLSGSRFRSGVRFCEDWLLLGSVLA-LLRFEPREL 227
           P  F       SRFRS  RFCE  LLLG VLA  LR  P EL
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYEL 115


>UniRef50_Q9XHE1 Cluster: CENPCA protein; n=7; Andropogoneae|Rep:
           CENPCA protein - Zea mays (Maize)
          Length = 701

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 217 GSNRSSA-NTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTNTNF 71
           GS + SA +  P K Q  Q    +RKR    K G+K+ G+S+ +P  TNF
Sbjct: 527 GSTKKSAPDLSPTK-QKKQQAVQERKRKQQSKRGKKVAGESLEIP-QTNF 574


>UniRef50_Q8IB93 Cluster: Putative uncharacterized protein
           MAL8P1.24; n=2; Plasmodium|Rep: Putative uncharacterized
           protein MAL8P1.24 - Plasmodium falciparum (isolate 3D7)
          Length = 1172

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 184 NKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTNTNFFC 65
           NK Q+S N+T ++K++ ++K  E    Q   L  NTN  C
Sbjct: 251 NKEQTSNNITKEKKKEKMKKGKETKVKQKNVLSKNTNEKC 290


>UniRef50_Q751C6 Cluster: AGL220Wp; n=3; Saccharomycetales|Rep:
           AGL220Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 880

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 549 GPRSASNIFR-SSDPHTPRAPEAGKPRRRFDPLHEKKSMNLNFIRKANIIQI 397
           GP S S   R  + PHTPR    G  RR  +PL E++   L+ IR+A + +I
Sbjct: 312 GPASPSAQNRIPTPPHTPRDFRRGSTRRHHEPLTEEEQKRLH-IRQAKVDKI 362


>UniRef50_Q4UD46 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 917

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = -1

Query: 645 PTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNIF-RSSDPHTPRAPEAGKPRR 469
           P   G PS+     +  K + L   +P  I   P+       +  +P TP+ PE   P++
Sbjct: 167 PFAAGDPSKSPDKLDLPKGKDLEPTKPPVIPPVPKEPEPTTPKEPEPTTPKEPEPTTPKK 226

Query: 468 RFDPLHEKKSMNLNFIRKANIIQINTYLNVSIISVHKQ 355
             +   ++K     FIR  +I+  +  +++S+ +   Q
Sbjct: 227 EEEKEKDEKKPYEKFIRLEDIVDGDAVIDLSLYTFATQ 264


>UniRef50_A0D3E3 Cluster: Chromosome undetermined scaffold_36, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_36,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 573

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 244 RPKM*VSSRGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQ 101
           RPK        ++ +   DPNK QSSQ++T  ++ D  R+SG K+  Q
Sbjct: 34  RPKNITFQGNDSQHNMVFDPNKVQSSQHMTFYKQNDSNRQSGAKVGSQ 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,509,582
Number of Sequences: 1657284
Number of extensions: 13372690
Number of successful extensions: 34119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34098
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)