Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0108
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.9  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    27   2.6  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    26   5.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   5.9  

>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 561 KISLGPRSASNIFRS-SDPHTPRAPEAGKPRRRF 463
           ++S G RS ++  R+  DP TP  P      RRF
Sbjct: 77  RLSSGRRSRASFARALQDPQTPNTPPVSSQHRRF 110


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 449 SCKGSNLLRGFPAS--GARGVCGSDDLKMLEADRGPKDIFRG-STALSDSYFTLSFDVRS 619
           +C+ SN  R FPAS   + G+C +D  K       P+ I +  S+ + DSY   + D  S
Sbjct: 350 TCRSSNRFRLFPASTPNSNGLCRNDS-KCRFLMILPETIIKSPSSFIGDSYNIANIDPPS 408

Query: 620 LLGV 631
            + V
Sbjct: 409 SMNV 412


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 211 NRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSI 95
           N+ +AN  PNKSQS +    D K     +S  K     I
Sbjct: 323 NQLAANEFPNKSQSEEGSNDDHKSVTTTESQNKFVNSQI 361


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 515 DDLKMLEADRGPKDIFRGSTALSDSYFTLSFDVRSLLGVP 634
           D  +ML   +GPKDIF       D    L    + L G+P
Sbjct: 159 DANEMLPQLKGPKDIFNKMVVFDDDTNGLEEAKKRLAGIP 198


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 226 SSRGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEK 113
           SS+ +NRSS NT+ +    + + +  R   P  +   K
Sbjct: 101 SSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRK 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,923
Number of Sequences: 5004
Number of extensions: 57353
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)