Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0108
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295...    28   8.0  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.0  

>09_04_0381 +
           17128437-17128655,17129250-17129331,17129409-17129564,
           17129646-17130431,17130743-17131094,17131467-17131548,
           17131756-17131833,17132041-17132055
          Length = 589

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEP--LKISLGPRSASNIFRSSDP 508
           E SP+LP T +  +     +  ES S + P  L+     +++ N+ RSS P
Sbjct: 401 ESSPSLPSTQASVQDEQVGITEESASIITPIILRKDAATQTSPNLSRSSSP 451


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 558 FLGALPH*ATPILLSHLTSDLCSESQAK*GFFRDQHYTTTRLA 686
           FLG  P    P ++SH  + LC  S+   G+    H+  T L+
Sbjct: 704 FLGLRPPKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLS 746


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,655
Number of Sequences: 37544
Number of extensions: 350814
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)