Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0108
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC131808-1|AAI31809.1| 337|Homo sapiens LOC155036 protein protein. 32 2.2
AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein. 32 2.2
BC044887-1|AAH44887.1| 739|Homo sapiens YY1AP1 protein protein. 30 6.8
Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain contai... 30 8.9
DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat ... 30 8.9
DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein. 30 8.9
DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein. 30 8.9
BC004303-1|AAH04303.1| 455|Homo sapiens TRIOBP protein protein. 30 8.9
BC003618-1|AAH03618.1| 593|Homo sapiens TRIOBP protein protein. 30 8.9
AF281030-1|AAG44841.1| 593|Homo sapiens Tara protein. 30 8.9
AB051449-1|BAB33332.2| 1653|Homo sapiens KIAA1662 protein protein. 30 8.9
>BC131808-1|AAI31809.1| 337|Homo sapiens LOC155036 protein protein.
Length = 337
Score = 31.9 bits (69), Expect = 2.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 615 RTSNERVK*ESLSAVEPLKISLGPRSASNIFRSSDPHTPRAPEAGKPRRRFDPLHEKK 442
R +ER+ SA P +S P + ++ P +PR +AG+ + R DP +KK
Sbjct: 122 RRRSERIFLHDASAAAPAPVSTAPATKTSRCAKGGPLSPR-KDAGRAKDRKDPRKKKK 178
>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
Length = 1134
Score = 31.9 bits (69), Expect = 2.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 615 RTSNERVK*ESLSAVEPLKISLGPRSASNIFRSSDPHTPRAPEAGKPRRRFDPLHEKK 442
R +ER+ SA P +S P + ++ P +PR +AG+ + R DP +KK
Sbjct: 874 RRRSERIFLHDASAAAPAPVSTAPATKTSRCAKGGPLSPR-KDAGRAKDRKDPRKKKK 930
>BC044887-1|AAH44887.1| 739|Homo sapiens YY1AP1 protein protein.
Length = 739
Score = 30.3 bits (65), Expect = 6.8
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNIFRSSDPHTPRAPEAGKP 475
E LP P RTS + ++L + P+ + P AS++FR P+ R P +
Sbjct: 467 ESPAALPAMPPEARTSFPLSESQTLLSSAPVPKVMMPSPASSMFRK--PYVRRRPSKRRG 524
Query: 474 RRRFDPLHEKKSMNLNFIRKANIIQINTYLNVSIISVHKQTEVCPDLN-GIRQSPLT 307
R F ++ I A++I V I+S+ + +N + QSP T
Sbjct: 525 ARAF-----RRIKPAPVIHPASVIFTVPATTVKIVSLGGGCNMIQPVNAAVAQSPQT 576
>Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain containing
protein ).).
Length = 2193
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 1775 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 1832
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 1833 GPRRGLGAPLTEDQQNRLS 1851
>DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat on
actin protein.
Length = 2266
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 1848 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 1905
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 1906 GPRRGLGAPLTEDQQNRLS 1924
>DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein.
Length = 2365
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 1947 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 2004
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 2005 GPRRGLGAPLTEDQQNRLS 2023
>DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein.
Length = 2193
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 1775 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 1832
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 1833 GPRRGLGAPLTEDQQNRLS 1851
>BC004303-1|AAH04303.1| 455|Homo sapiens TRIOBP protein protein.
Length = 455
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 32 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 89
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 90 GPRRGLGAPLTEDQQNRLS 108
>BC003618-1|AAH03618.1| 593|Homo sapiens TRIOBP protein protein.
Length = 593
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 175 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 232
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 233 GPRRGLGAPLTEDQQNRLS 251
>AF281030-1|AAG44841.1| 593|Homo sapiens Tara protein.
Length = 593
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 175 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 232
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 233 GPRRGLGAPLTEDQQNRLS 251
>AB051449-1|BAB33332.2| 1653|Homo sapiens KIAA1662 protein protein.
Length = 1653
Score = 29.9 bits (64), Expect = 8.9
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 654 EKSPTLPGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNI--FRSSDPHTPRAPEAG 481
E SP +P R RT + L+ E L+ L RS F ++D TP P
Sbjct: 1235 ELSPLTQASPQRARTPARTP--DRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGE 1292
Query: 480 KPRRRFD-PLHEKKSMNLN 427
PRR PL E + L+
Sbjct: 1293 GPRRGLGAPLTEDQQNRLS 1311
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,011,280
Number of Sequences: 237096
Number of extensions: 2068835
Number of successful extensions: 4134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4134
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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