Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0108
         (690 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81384-1|AAD00517.1|  717|Drosophila melanogaster dMyc1 protein.       29   7.9  
U77370-1|AAB39842.2|  717|Drosophila melanogaster transcription ...    29   7.9  
AY058627-1|AAL13856.1|  717|Drosophila melanogaster LD32539p pro...    29   7.9  
AL121800-1|CAD24780.1|  717|Drosophila melanogaster EG:BACN5I9.1...    29   7.9  
AE014298-519|AAF45866.2|  717|Drosophila melanogaster CG10798-PA...    29   7.9  

>U81384-1|AAD00517.1|  717|Drosophila melanogaster dMyc1 protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 229 VSSRGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTNTN 74
           V S   + SS+++    S ++ +    RKR  L+  G  +   S+YLP   N
Sbjct: 500 VDSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVNN 551


>U77370-1|AAB39842.2|  717|Drosophila melanogaster transcription
           factor dMyc/dm protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 229 VSSRGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTNTN 74
           V S   + SS+++    S ++ +    RKR  L+  G  +   S+YLP   N
Sbjct: 500 VDSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVNN 551


>AY058627-1|AAL13856.1|  717|Drosophila melanogaster LD32539p
           protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 229 VSSRGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTNTN 74
           V S   + SS+++    S ++ +    RKR  L+  G  +   S+YLP   N
Sbjct: 500 VDSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVNN 551


>AL121800-1|CAD24780.1|  717|Drosophila melanogaster
           EG:BACN5I9.1,FBgn0000472;dm protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 229 VSSRGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTNTN 74
           V S   + SS+++    S ++ +    RKR  L+  G  +   S+YLP   N
Sbjct: 500 VDSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVNN 551


>AE014298-519|AAF45866.2|  717|Drosophila melanogaster CG10798-PA
           protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 229 VSSRGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTNTN 74
           V S   + SS+++    S ++ +    RKR  L+  G  +   S+YLP   N
Sbjct: 500 VDSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVNN 551


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,895,651
Number of Sequences: 53049
Number of extensions: 603678
Number of successful extensions: 1613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)