Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0108
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    32   0.44 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein (sp...    27   9.6  

>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 214 SNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEKLCGQSIYLPTN 80
           +N+ S N   N+   S +L+    R  L KS +KLC   IY+P N
Sbjct: 202 ANKLSLNQSANQQLDSTHLS--ELRQVLSKSNQKLCLMDIYMPLN 244


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 226 SSRGSNRSSANTDPNKSQSS---QNLTPDRKRDPLR 128
           SSR  +RSS+ +D     SS   +N  P RKR+P+R
Sbjct: 50  SSRSRSRSSSESDSRSRSSSPVVKNSPPKRKREPIR 85


>Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical
           protein ZC247.2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 220 RGSNRSSANTDPNKSQSSQNLTPDRKRDPLRKSGEK 113
           R  N ++++    +S S  ++TPDR+ DP+ + G K
Sbjct: 325 RALNGNASSRGLGRSISRSSMTPDRRLDPILEDGSK 360


>U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform c protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 149 SETRPTEKIRRETLWAKYLFTDKH 78
           +E  P  + R+ETLW  Y +   H
Sbjct: 88  AEANPVRRARKETLWVNYQYISIH 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,602
Number of Sequences: 27780
Number of extensions: 322010
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)