Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0108
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 512 SDDLKMLEADRGPK 553
           SD+L+ LE  RGPK
Sbjct: 13  SDELRYLEKVRGPK 26


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 618 DRTSNERVK*ESLSAVEPLKISLGPRSASNIFRSSDPHTPRAPEAGK 478
           +RT  +R+      A    K++L   S  ++ R   PH   A E G+
Sbjct: 558 ERTEEQRIALRKYHAPRLAKLALESTSMIDVVRYGKPHC--AEEIGR 602


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 618 DRTSNERVK*ESLSAVEPLKISLGPRSASNIFRSSDPHTPRAPEAGK 478
           +RT  +R+      A    K++L   S  ++ R   PH   A E G+
Sbjct: 596 ERTEEQRIALRKYHAPRLAKLALESTSMIDVVRYGKPHC--AEEIGR 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,376
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)