Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0108
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44500.1 68416.m04783 Ulp1 protease family protein similar to...    31   0.95 
At4g35930.1 68417.m05111 expressed protein                             30   1.7  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         28   5.1  
At4g15980.1 68417.m02426 pectinesterase family protein contains ...    28   5.1  
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    28   6.7  
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    27   8.9  

>At3g44500.1 68416.m04783 Ulp1 protease family protein similar to
           At1g32840, At4g04010, At2g06430, At2g15140, At2g04980,
           At2g14130, At2g15190, At3g47260, At5g34900, At3g29210,
           At2g02210, At3g32900
          Length = 805

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 624 SRDRTSNERVK*ESLSAVEPLKISLG-PRSASNIFRSSDPHTPRAPEAGKPRRR 466
           SR R  N+RVK  S+ A + LKI    PR       S+D H P   EA   +R+
Sbjct: 483 SRGRNENKRVK-PSVHAEDNLKIRKQVPRKRQKQVDSADVHVPTRKEAQSKKRK 535


>At4g35930.1 68417.m05111 expressed protein 
          Length = 321

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 612 TSNERVK*ESLSAVEPLKISLGP--RSASNIFRSSDPHTPRAPE-AGKPRRR 466
           T+ +R + E L  + P+ I+  P  R   N    S PHTP+AP+ A +P  R
Sbjct: 207 TTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSR 258


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -1

Query: 636 PGTPSRDRTSNERVK*ESLSAVEPLKISLGPRSASNIFRSSDPHTPRAPEAGKPRRRFDP 457
           PG+        + ++  SL+   P+    GPR      +S  P   ++P  G P+R   P
Sbjct: 25  PGSQGNSNALADNMQNLSLNRPPPMMPGSGPRPPPPFGQSPQPFPQQSPSYGAPQRGPSP 84

Query: 456 L 454
           +
Sbjct: 85  M 85


>At4g15980.1 68417.m02426 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 701

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 241 PKM*VSSRGSNRSSANTDPNKSQSSQN--LTPDRKRDPLRK 125
           P+   SS      S+   P KS SS+N  L P RK +PL K
Sbjct: 312 PQKSTSSENQPLDSSENPPQKSTSSENRPLDPLRKLNPLNK 352


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 211 NRSSANTDPNKSQSSQNLTPDRKR 140
           N SS N+  N SQSS+N   +RKR
Sbjct: 731 NASSHNSSQNHSQSSENRPRERKR 754


>At3g62700.1 68416.m07043 glutathione-conjugate transporter, putative
            similar to glutathione-conjugate transporter AtMRP4
            GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 182  QEPVFAESNTGSETRPTEKIRRETLW 105
            QEPV  E    S   PTEK   E +W
Sbjct: 1379 QEPVLFEGTVRSNIDPTEKYSDEEIW 1404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,491,164
Number of Sequences: 28952
Number of extensions: 291164
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)