Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0107
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1EE0D Cluster: PREDICTED: hypothetical protein;...    33   4.4  
UniRef50_Q8C5V5 Cluster: WD repeat-containing protein 27; n=8; E...    33   5.8  

>UniRef50_UPI0000F1EE0D Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 464

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 8   PSSTSRRWRKRHASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYP 154
           P + + RWR+R   T H       SAP   R  V  +APA +RP  S P
Sbjct: 140 PLTQTTRWRRRRKRTAHAPECPPVSAPAPERPPV--SAPAPERPPVSAP 186


>UniRef50_Q8C5V5 Cluster: WD repeat-containing protein 27; n=8;
           Eutheria|Rep: WD repeat-containing protein 27 - Mus
           musculus (Mouse)
          Length = 780

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 32  RKRHASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRDPLIP 172
           +KR   T  R    Q S P+DH+ R RH A       A++P   L P
Sbjct: 252 KKRETFTTRRMMAEQCSLPEDHQCRCRHEADKRGEAEATFPILSLAP 298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,093,479
Number of Sequences: 1657284
Number of extensions: 8431778
Number of successful extensions: 22139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22125
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)