Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0107
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   0.53 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    25   0.53 
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   1.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   1.6  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   5.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   5.0  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 340 VTFCQLCIAKRRRTQ*ILTRKEFVSLEERRVRNV 239
           VT C+L I + +RT+ +L R      +   +RN+
Sbjct: 297 VTVCELTILEYKRTKKLLYRIPVTKTDSMLIRNI 330


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 340 VTFCQLCIAKRRRTQ*ILTRKEFVSLEERRVRNV 239
           VT C+L I + +RT+ +L R      +   +RN+
Sbjct: 122 VTVCELTILEYKRTKKLLYRIPVTKTDSMLIRNI 155


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 464 FKPTSHDCVRIASLSALL*VSIHLSIFVFYNLQAYDSV 577
           FK  +HD  R +SL  L+       +FV YN+    +V
Sbjct: 166 FKTLTHDEPRKSSLVQLILTQAIFLMFVSYNIYVCQTV 203


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 464 FKPTSHDCVRIASLSALL*VSIHLSIFVFYNLQAYDSV 577
           FK  +HD  R +SL  L+       +FV YN+    +V
Sbjct: 92  FKTLTHDEPRKSSLVQLILTQAIFLMFVSYNIYVCQTV 129


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
 Frame = +3

Query: 354 DVLFVCLFFYS-----QIIT*NNFIR*ASRHSRPVSVEFREILSPR------HTIVLESR 500
           DV   CL   +     Q++T  NFI   + + +  + EF+E L         +T+V  S 
Sbjct: 237 DVFGTCLILITGKSIVQLLTCLNFI---TNNLKSENEEFKEKLLAANLCLVIYTLVSVSL 293

Query: 501 VSVPCYECLYICLYSFSITYKLMIQ 575
           V V C  C      + S  YKL  Q
Sbjct: 294 VMVTCDACTIASKQTISWCYKLQEQ 318


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
 Frame = +3

Query: 354 DVLFVCLFFYS-----QIIT*NNFIR*ASRHSRPVSVEFREILSPR------HTIVLESR 500
           DV   CL   +     Q++T  NFI   + + +  + EF+E L         +T+V  S 
Sbjct: 237 DVFGTCLILITGKSIVQLLTCLNFI---TNNLKSENEEFKEKLLAANLCLVIYTLVSVSL 293

Query: 501 VSVPCYECLYICLYSFSITYKLMIQ 575
           V V C  C      + S  YKL  Q
Sbjct: 294 VMVTCDACTIASKQTISWCYKLQEQ 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,663
Number of Sequences: 336
Number of extensions: 2205
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)