Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0107
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013... 29 2.4
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 29 2.4
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651... 29 2.4
04_01_0599 + 7871933-7872004,7872696-7873168,7873257-7873334,787... 29 4.1
11_06_0611 + 25461469-25461655,25461670-25462238 28 5.4
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 28 7.2
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 28 7.2
11_01_0624 - 5021105-5022061 27 9.5
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 27 9.5
>10_08_0392 +
17500748-17500877,17501006-17501280,17501321-17501388,
17501516-17501632,17501802-17501943,17502622-17502912,
17503507-17503650
Length = 388
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 379 KNRQTNKTSHHTFVTFCQLCIAKRRR 302
+N T TS H VTFC L +A+R R
Sbjct: 57 ENAATTLTSWHLMVTFCTLYVAQRLR 82
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 41 HASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRD 160
H TL + RS +DHR R RH A D PRD
Sbjct: 28 HRKTLDQLLRFARSLDRDHRRRNRHLLDADDDDDDDPPRD 67
>05_05_0185 +
23064249-23064448,23064881-23064950,23065082-23065120,
23065639-23066067,23067322-23067627
Length = 347
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 20 SRRWRKRHASTLHREXXHQRSAPQDHR---GRVRHAAPAGDRPRASYPRDPLIPSRHKLL 190
SRRW++ L R H P D GR R A G+R R + +P +L
Sbjct: 154 SRRWKEARNRALSRRIRHDGEKPVDGARAGGRKRVIARGGERFRGGFAE---MPGSRRLA 210
Query: 191 FPARFNDYATL 223
R + +A +
Sbjct: 211 SAGRHSHFAAM 221
>04_01_0599 +
7871933-7872004,7872696-7873168,7873257-7873334,
7873446-7873665
Length = 280
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 353 TSHFRHVLPTLYSEEKKNTVDLNT 282
T H++ +LP L S++ +N +D+NT
Sbjct: 116 TKHYKALLPALGSDKIRNVMDMNT 139
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 5 WPSSTSRRWRKRHASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYP 154
+P S + WR+ A T+H +R P R APAG A P
Sbjct: 148 FPQSGLQIWRREGAPTIHAVAPPRRPPPPRLPSRASPLAPAGSDGMAPPP 197
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 14 STSRRWRKRHAST-LHRE-XXHQRSAPQDHRGRVRHAAPAGDRPRAS 148
+TSR WR HA T HR +R R AA AG P A+
Sbjct: 29 ATSRVWRTEHAGTGTHRRAHPDERGGGAGRRRSAVEAAAAGAEPAAA 75
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 156 RGYEARGRSPAGAACRTLPRWSWGA 82
RG RS A AA +P+WSWG+
Sbjct: 543 RGLVHYARSIADAAVGEVPQWSWGS 567
>11_01_0624 - 5021105-5022061
Length = 318
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 507 LRLAILTQSCDVGLKFRETQRTRDENDEMLS 415
L AI++ CD G K+ T TR +ND+ +S
Sbjct: 259 LETAIVSLHCDCGDKWGWTGYTRSDNDKSIS 289
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 367 TNKTSHHTFVTFCQLCIAKRRR 302
T TS H VTFC L +A+R R
Sbjct: 40 TTLTSWHLMVTFCTLHVAQRMR 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,942
Number of Sequences: 37544
Number of extensions: 237293
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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