Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0107
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           29   3.2  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              29   4.2  
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7)                27   9.7  
SB_24729| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07)                 27   9.7  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.7  
SB_19028| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-07)                 27   9.7  

>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +2

Query: 5   WPSSTSRRWRKRHAS-TLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRDPLIPSRH 181
           W   T   +R RH     HR    +R A  D  GR RH+     R   S P DP  P+R 
Sbjct: 412 WDKVTGEEFRPRHHHHNHHRHAASERDARSDGSGRHRHS-----RSVTSEPPDP--PNRR 464

Query: 182 KLLFPARFN 208
            +  P   N
Sbjct: 465 IMTPPLPSN 473


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +2

Query: 11   SSTSRRWRKRHASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYP---RDPLIPSR- 178
            SS+     K    ++HR      S P  H+G+V H  P   R  +S+P   +   IPS  
Sbjct: 987  SSSHPPGHKGQVHSIHRAQRASSSHPTGHKGQV-HPIPRAQRASSSHPLGTKGKFIPSTG 1045

Query: 179  HK 184
            HK
Sbjct: 1046 HK 1047


>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 17  TSRRWRKRHASTLHREXXHQRSAPQDHR-GRVRHAAPAGDRPRASYPRDPLIPSRHK 184
           TSR  R RH ++ H    H+RS  +  +  R RH     ++ R    R     SRH+
Sbjct: 91  TSRHGRSRHKTSRHETSRHERSRHETRQHERSRHKTSRHEKSRHETSRHE--RSRHE 145



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 17  TSRRWRKRHASTLHREXXHQRSAPQDHR 100
           TSR  R RH S  H+   H+RS  +  R
Sbjct: 16  TSRHERSRHESNRHKTSRHERSRHETSR 43


>SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7)
          Length = 398

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 8   PSSTSRRWRKRHASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRDPL-IPSRHK 184
           P S+  R +    S L  E  +QR+  Q         +P    PR+S PR P+ +P+  +
Sbjct: 200 PKSSLDRMQIERKSELV-EFMNQRTKRQSRPSTAPPCSPRTSIPRSSIPRSPIHVPTSER 258

Query: 185 LLFPARFNDYA 217
            L  A  +D A
Sbjct: 259 ELTSACESDIA 269


>SB_24729| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 404 ILCDYLTVKKQTNKQNVTSHFRHVLP 327
           +LC  +T+ +   KQNVT+H  H  P
Sbjct: 43  MLCITITIHRTIAKQNVTNHILHQPP 68


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
 Frame = +2

Query: 38   RHASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRDPL-----IPSRH---KLLF 193
            RH      E       P  H+G +R  +P   R  A YP         +P  H     L 
Sbjct: 3028 RHFQVTPIEFGPSHPIPHTHKGGLRTLSPTRTRAFAPYPPHAQGLSHPMPHTHIGLCTLS 3087

Query: 194  PARFNDYATLP*HVRDVSHSPLFE*HK 274
            P R   +A  P H +  SH P+   HK
Sbjct: 3088 PRRTRAFAPYPPHAQGPSH-PIPHTHK 3113


>SB_19028| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-07)
          Length = 315

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 404 ILCDYLTVKKQTNKQNVTSHFRHVLP 327
           +LC  +T+ +   KQNVT+H  H  P
Sbjct: 43  MLCITITIHRTIAKQNVTNHILHQPP 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,941
Number of Sequences: 59808
Number of extensions: 299503
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)