Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0107
         (640 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC150276-1|AAI50277.1| 1618|Homo sapiens KIAA0556 protein.             31   2.6  
AB011128-1|BAA25482.2| 1625|Homo sapiens KIAA0556 protein protein.     31   2.6  

>BC150276-1|AAI50277.1| 1618|Homo sapiens KIAA0556 protein.
          Length = 1618

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 5    WPSST-SR-RWRKRHASTLHREXXHQRSAPQDHRGRVRHAAPAGD 133
            W S T SR RWR     TLH       +  + HRGR+ +    GD
Sbjct: 878  WSSRTPSRSRWRSEQEHTLHESWSSLSAFDRSHRGRISNTELPGD 922


>AB011128-1|BAA25482.2| 1625|Homo sapiens KIAA0556 protein protein.
          Length = 1625

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 5    WPSST-SR-RWRKRHASTLHREXXHQRSAPQDHRGRVRHAAPAGD 133
            W S T SR RWR     TLH       +  + HRGR+ +    GD
Sbjct: 885  WSSRTPSRSRWRSEQEHTLHESWSSLSAFDRSHRGRISNTELPGD 929


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,884,180
Number of Sequences: 237096
Number of extensions: 1301864
Number of successful extensions: 6697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6697
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)