Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0107
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z77652-13|CAB01120.2|  308|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical
           protein F15A8.7 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 41  HASTLHREXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRDPLI 169
           H++T H    H     Q HR    H AP   R +A  P +P +
Sbjct: 429 HSATEHGAHNHSEHH-QLHRSIFHHGAPTSIRSQAQVPHNPFL 470


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 38  RHASTL--HREXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRDPLIP 172
           +HA  L   ++  HQ+   Q H+ + +  AP G RP   YP  P+ P
Sbjct: 777 QHAQYLAWQQQRYHQQ---QQHQQQQQQGAPGGPRPPYPYPGGPVPP 820


>Z77652-13|CAB01120.2|  308|Caenorhabditis elegans Hypothetical
           protein C06B3.11 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 444 SVEFREILSPRHTIVLESRVS--VPCYECLYICLYSFSITYKLMI 572
           S+    + SP  T+ +   ++  VPC  CL++  + +++   ++I
Sbjct: 37  SLRIPSMKSPFGTLTINQNIAELVPCLACLFVFFFGYTLNLNIVI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,659,755
Number of Sequences: 27780
Number of extensions: 209553
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)