Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0106
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    53   5e-08
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.6  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   2.6  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   7.9  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
 Frame = +1

Query: 208 VNFTHFKTMYFTARIRKEHLEIAFKECSASGLEET---ETVLNVIDAFNIPKLSYDNERN 378
           +N  H   +   AR++      +F   S S + ET   E    V+DAF +PK  YD+ R 
Sbjct: 98  LNVPHEVRVSSLARVQTLETTGSFLNSSNSEIRETIKNEKYFRVLDAFKMPKFKYDSSRK 157

Query: 379 KFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLFAQEACL-HWAEEKYFQLRKIE 555
            FV S     L          L  R+ +++ R +RN+ F   +    +++   +QL  I 
Sbjct: 158 VFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNESFQTPSFSGSFSQTGTYQLTPIR 217

Query: 556 ALLSSSSRIDDVIVLGLLIQLTEGNITWKIQLGS-VVLDMS 675
            LL  +   +  ++ GLL    +G + W   L S V LD+S
Sbjct: 218 NLLGRAG--NTFLLFGLLTIAPDGTL-WLEDLDSQVQLDVS 255


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 537 EIFLLGPMKAGFLSKQFIPNSSLPYYFVSVY----QELRFPLRFWI*IVLMYR 391
           +++L+G +   FL      N   P  FV+ +       +FPL F++ ++ +YR
Sbjct: 43  QVYLVGQVDCRFLLHHNAKNKQFPLIFVTNFITSLPNFQFPLFFFVSLLHLYR 95


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 680 VGDISRTTLPSWIFQVIFPSVNCIKRPSTITSSIRLE 570
           +GD S T LPS + Q++ P ++    PS      RL+
Sbjct: 109 LGDGSSTVLPSSLKQMLDPEISTANNPSAKPRRTRLQ 145


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
 Frame = +1

Query: 379 KFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQL----R 546
           K  + +HK N   E KW +Q  I +   + QR +  +  A E      E   F L    R
Sbjct: 344 KIQQILHKQNKIIEEKWISQIRISKNLEVKQRLLDQERHALETLAKNIENNRFILGKRRR 403

Query: 547 KIEALLSSSSRIDDVIVLGLLIQLTEGNITW 639
           K    L     + D+ V  L I  +E  + +
Sbjct: 404 KAREALQKLDNLKDLSVQELFIIPSERELKY 434


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -1

Query: 672 HIENNTAQLDLPSNISFCQLY*KTEHNHIIDSTRRA*QRFDFAQLEIFLLGPMKAGFLSK 493
           H+ N+    D  + ++ C+LY +    HI  S+RRA   F++A     +LG   A ++  
Sbjct: 357 HLANDKGNAD--AMLALCKLYLRGLPGHIFPSSRRA---FEYAH-RAAMLGHAPACYVLG 410

Query: 492 QF 487
           +F
Sbjct: 411 KF 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,678
Number of Sequences: 5004
Number of extensions: 62301
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)