Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0106
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0444 + 3520227-3520398,3520493-3520673,3521465-3521618,352... 41 8e-04
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 32 0.50
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 29 2.7
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 29 3.5
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 29 4.7
05_05_0180 - 23027979-23028092,23028180-23028255,23028342-230284... 29 4.7
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 29 4.7
08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977... 28 8.2
>05_01_0444 +
3520227-3520398,3520493-3520673,3521465-3521618,
3522222-3522326,3522415-3522495,3522802-3522889,
3523204-3523286,3524370-3524480,3524681-3524827
Length = 373
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +1
Query: 283 ECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEI 462
+ ++ + L V+D+F +P+ YD + F + + ++ E KA DRY++
Sbjct: 83 DAASPAATSARSALRVVDSFVVPRFHYDPIKKVFYEHTSRLAIHGEAGDKAALYRDRYQV 142
Query: 463 IWQRTVRNKLFAQEA 507
+ QR R+ F++ A
Sbjct: 143 LLQRLARDIYFSKPA 157
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = +1
Query: 259 EHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQ 438
E ++ A ++ S L++ + + + A ++ +LSYD E N +H N++ P K+
Sbjct: 41 ESIQAALEKVSKVQLDQLDKQIKIW-ARDVRELSYDIEDNIDTFMLHINDIEPNKKYNFT 99
Query: 439 FLIDR 453
+LID+
Sbjct: 100 WLIDK 104
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +2
Query: 152 VADQITSMTPHERRAILDKLTSHILKQCIS 241
+++ + ++ PH+R A+ D++ + ++KQC S
Sbjct: 204 LSEMLKAVNPHDRGAVNDEIITELVKQCRS 233
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 259 EHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQ 438
+ ++ A ++ S L++ + + A++I +LSYD E N + V + L P K
Sbjct: 67 QSIQAALEKISKVPLDQLDKQTKIW-AWDIRELSYDIEDNIDMFMVRVDGLEPAKKHNFT 125
Query: 439 FLIDR-YEIIWQRTVRNKL 492
+LID+ +E + + +R+K+
Sbjct: 126 WLIDKCHESLSKIKIRHKI 144
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 39 FTKNL--ITYNKKVWNRYVQKLTMHLNLVDLLYAKKL 143
FT N IT+N+K+W Q + M L+L D+ A +L
Sbjct: 554 FTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRL 590
>05_05_0180 -
23027979-23028092,23028180-23028255,23028342-23028433,
23028689-23028790,23028865-23029138,23029203-23029503,
23029639-23029870,23029955-23030011,23030103-23030261,
23030356-23031192,23031383-23031437,23032103-23032158
Length = 784
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 39 FTKNL--ITYNKKVWNRYVQKLTMHLNLVDLLYAKKL 143
FT N IT+N+K+W Q + M L+L D+ A +L
Sbjct: 580 FTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRL 616
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 39 FTKNL--ITYNKKVWNRYVQKLTMHLNLVDLLYAKKL 143
FT N IT+N+K+W Q + M L+L D+ A +L
Sbjct: 428 FTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRL 464
>08_01_1083 +
11096520-11096664,11097543-11097592,11097682-11097754,
11099122-11099201,11099354-11099505,11100653-11100812,
11100886-11100933,11101118-11101198,11101517-11101597
Length = 289
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 402 EQFISRTEVESAILDRQIRNNMAKNC*E*IVCSRSLPSLGRGEIFPIAQN 551
EQ+ E+ AI +QI NN+ K I+ + + L RG++ I +
Sbjct: 166 EQYQKANEIFEAIARQQINNNLLKYSVRGILLNAGICQLCRGDVVAITNS 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,810
Number of Sequences: 37544
Number of extensions: 348994
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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