Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0106
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            99   2e-21
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 35   0.073
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  30   2.1  
SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)           29   4.8  
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)                  29   4.8  
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)                    29   4.8  
SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          28   6.3  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)       28   8.4  
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       28   8.4  

>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score =   99 bits (238), Expect = 2e-21
 Identities = 50/154 (32%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
 Frame = +1

Query: 250 IRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKW 429
           + +E +E A +ECS    E+++    +IDAF++P  ++++ER KF     ++ L+P  + 
Sbjct: 61  VDREVVETAVQECSRDPSEDSDKAFCIIDAFDVPTFAFNSERKKFFPVSGRSALHPNAEV 120

Query: 430 KAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKY----FQLRKIEALLSSSSRIDDVIV 597
           K++   +RY +I QRT+R++LF+    L   ++      F L+ +E LL S+  + +VIV
Sbjct: 121 KSELYKERYTVIQQRTIRHELFSNVGDLEAVKQNQTSDKFDLKTVEYLLGSTGSLGNVIV 180

Query: 598 LGLLIQLTEGNITWKIQLGSVVLDMSPTRYHSRL 699
           LG+L Q+ EG    +   G+V LD++  ++H+ L
Sbjct: 181 LGMLTQIKEGKFYLEDPTGAVELDITEVKFHTGL 214


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = -3

Query: 628 FLLSTVLKDRAQSHHRFD*KSLAALRFCAIGNISPRPNEGRLLEQTIYS*QFFAILFRIC 449
           F +  +L   A+ H+    KS   + F AIG+I+ RP  GRL +   Y   +   +F++C
Sbjct: 249 FFMPAILVKFAEDHNIEKTKSSTVVVFFAIGSITFRPILGRLSD---YLPSYRLQIFQLC 305

Query: 448 LSRIALSTSVLDINCSYV 395
              IAL+ + + +  +Y+
Sbjct: 306 FLVIALANTFVVLATNYI 323


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 304 EETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQ-FLIDRYEIIWQRT- 477
           E TETV ++ +  NIP    D  + K +  VH + L    + K    L +  EI++ RT 
Sbjct: 651 EGTETVEDIAERLNIPVEEVDETKAKAI-VVHGSQLKDYDQEKIDGILCNHTEIVFARTS 709

Query: 478 VRNKLFAQEAC 510
            + KL   E C
Sbjct: 710 PQQKLIIVEGC 720


>SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -1

Query: 480 NSSLPYYFVSVYQELRFPLRFWI*IVLMYRFNELISLIVVTQFGNVKSVDYV*NSFGLF 304
           +SSLPYY+V V          W+ + L+   + ++ ++   QF NVKS+ ++ +S   F
Sbjct: 440 HSSLPYYWVYVA---------WVLVFLLTTASAIVVILYGMQFKNVKSLSWLTSSIVSF 489


>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
          Length = 977

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 439 FLIDRYEIIWQRTVRNKLFAQEACLHWAEE-KYFQLRKIEALLSSSS 576
           F+ D+Y+ I+ RTV++ L A    L   E+ K   +R +++ L ++S
Sbjct: 726 FMCDQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSYLCANS 772


>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
          Length = 562

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 113 LSGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQ-PVLGKNTWKSPSKNA 289
           +  F  + E+  Y  +QI    P +  A ++KL +HI K C+S  P+ G           
Sbjct: 260 IDSFLRQWESVEYEGEQIV---PEKGIAEINKLLAHIRKGCLSGIPLSGGTNRNEGIHRV 316

Query: 290 LHRVLKRPK 316
           L++ LKR +
Sbjct: 317 LNKTLKRSR 325


>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 547 KIEALLSSSSRIDDVIVLGLLIQLTEGNITWKI 645
           +I  ++S+   +  V VLG+L  + EG   WK+
Sbjct: 343 EIGTMVSTRGEVKQVKVLGILAMIDEGETDWKV 375


>SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 110 KLSGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVLGKNTWKSPSK 283
           KL G+++ +    YV   +    P ER +I+ +    ILK C+ +    K   K+P K
Sbjct: 217 KLEGYSLGRAVDYYVYSLVRH--PIERVSIVVRSPRAILKLCVDEEKRPKGLGKAPKK 272


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 140 ASTYVADQITSMTPHERRAILDKLTSHI 223
           AS  V     ++TPH+R+ + +++TSH+
Sbjct: 157 ASVKVLSGELNLTPHQRKGLRERVTSHV 184


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 275  AISRCSFLIRAVKYIVLKCVKLTCQELPVVHVESLKLFDRQRK-C*LLCV 129
            A+S C  L RA+    L C+ +TC +L  + V    L       C LLC+
Sbjct: 1073 AMSCCPLLCRAIPCYDLLCLAMTCYDLLCLAVPCYALLSLAMPCCPLLCL 1122


>SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)
          Length = 307

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 223 FKTMYFTARIRKEHLEIAFKECSASGLEETETVLNVIDA 339
           +K  Y T ++++  LE+  KECS +G +      + I A
Sbjct: 227 WKKFYMTNKVQELTLEVVCKECSGAGFKIISNTPSTITA 265


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 223 FKTMYFTARIRKEHLEIAFKECSASGLEETETVLNVIDA 339
           +K  Y T ++++  LE+  KECS +G +      + I A
Sbjct: 277 WKKFYMTNKVQELTLEVVCKECSGAGFKIISNTPSTITA 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,401,112
Number of Sequences: 59808
Number of extensions: 422501
Number of successful extensions: 1095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)