Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0106
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z66500-11|CAC42334.1|  625|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z66500-10|CAB61022.1|  666|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z66500-9|CAA91307.1|  672|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF070920-1|AAC24231.1|  554|Caenorhabditis elegans cytoplasmic s...    29   3.2  
AF063244-1|AAC16434.1|  666|Caenorhabditis elegans cytoplasmic s...    29   3.2  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80032-2|AAM15555.1|  643|Caenorhabditis elegans Osmotic stress ...    28   7.4  
AY360470-1|AAR12229.1|  643|Caenorhabditis elegans osmotic stres...    28   7.4  
Z81546-2|CAB04450.1|  276|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormo...    27   9.8  

>U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical
           protein F08B4.5 protein.
          Length = 534

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
 Frame = +1

Query: 250 IRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKW 429
           I +E +   F++C + G ++   +LNV DAF++    +D +  K V    K +L  +   
Sbjct: 66  ISEELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSS 125

Query: 430 KAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLL 609
            +     R+ I+ QR +R        C   A  K F+    E L SS+  +  V+VLG+L
Sbjct: 126 FSHAARQRFFIVKQRAMR--------C---ASLKNFKFTTCEILGSSTKHLQSVVVLGML 174

Query: 610 IQLTEGNITWKIQLGSVVLDM-SPTRYHSRL 699
            Q        +   GSV ++    T++H  L
Sbjct: 175 TQQKADCYHIEDLSGSVEVEFKEDTKFHHAL 205


>Z66500-11|CAC42334.1|  625|Caenorhabditis elegans Hypothetical
           protein T05C12.6c protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 116 SGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVLGKNTW 268
           SG T+R EA+T V   + S  PH   A + +   H L+     PV    TW
Sbjct: 476 SGTTMRVEATTEVT-YVGSPAPHALAARVGRNIPHRLETTTLSPVAHDQTW 525


>Z66500-10|CAB61022.1|  666|Caenorhabditis elegans Hypothetical
           protein T05C12.6b protein.
          Length = 666

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 116 SGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVLGKNTW 268
           SG T+R EA+T V   + S  PH   A + +   H L+     PV    TW
Sbjct: 517 SGTTMRVEATTEVT-YVGSPAPHALAARVGRNIPHRLETTTLSPVAHDQTW 566


>Z66500-9|CAA91307.1|  672|Caenorhabditis elegans Hypothetical
           protein T05C12.6a protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 116 SGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVLGKNTW 268
           SG T+R EA+T V   + S  PH   A + +   H L+     PV    TW
Sbjct: 517 SGTTMRVEATTEVT-YVGSPAPHALAARVGRNIPHRLETTTLSPVAHDQTW 566


>AF070920-1|AAC24231.1|  554|Caenorhabditis elegans cytoplasmic
           signalling transducer protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 116 SGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVLGKNTW 268
           SG T+R EA+T V   + S  PH   A + +   H L+     PV    TW
Sbjct: 405 SGTTMRVEATTEVT-YVGSPAPHALAARVGRNIPHRLETTTLSPVAHDQTW 454


>AF063244-1|AAC16434.1|  666|Caenorhabditis elegans cytoplasmic
           signalling transducer protein.
          Length = 666

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 116 SGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVLGKNTW 268
           SG T+R EA+T V   + S  PH   A + +   H L+     PV    TW
Sbjct: 517 SGTTMRVEATTEVT-YVGSPAPHALAARVGRNIPHRLETTTLSPVAHDQTW 566


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 659 TLPSWIFQVIFPSVNCIKRPSTITSSIRLEELSSASIL 546
           T+P+ I Q++ P+ + +K+P+    SI +EE+    +L
Sbjct: 156 TIPT-IGQIVLPNHSSVKKPAETPKSINIEEMDMFDLL 192


>U80032-2|AAM15555.1|  643|Caenorhabditis elegans Osmotic stress
           resistant protein 1 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 191 RAILDKLTSHILKQCISQPVLGKNTWKSPSK 283
           +A++DK  + IL   ++  + GKN +K P +
Sbjct: 164 KAVMDKFQTQILPGLVANMIAGKNPFKMPQQ 194


>AY360470-1|AAR12229.1|  643|Caenorhabditis elegans osmotic stress
           resistance protein protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 191 RAILDKLTSHILKQCISQPVLGKNTWKSPSK 283
           +A++DK  + IL   ++  + GKN +K P +
Sbjct: 164 KAVMDKFQTQILPGLVANMIAGKNPFKMPQQ 194


>Z81546-2|CAB04450.1|  276|Caenorhabditis elegans Hypothetical
           protein F53A2.2 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 399 MYRFNELISLIVVTQFGNVKSVDY 328
           M+RF+ L+ L V+  FG+ +S++Y
Sbjct: 29  MFRFSHLLILTVLFNFGSAQSLEY 52


>AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 261 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 199 NCPSFMWSH*SYLIGNVSASFFAYSKSTKFKCIVN 95
           N P    SH   ++    ASFF  +   KF+CI N
Sbjct: 12  NDPETTSSHFGAIVCTACASFFGRTTVDKFRCIAN 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,875
Number of Sequences: 27780
Number of extensions: 345069
Number of successful extensions: 875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)