Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0106
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.69 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 127 YTQRS*HLRCRSNNFND 177
           YT ++ H RC  NN+ND
Sbjct: 147 YTVKNFHPRCAVNNYND 163


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 51  LITYNKKVWNRYVQKLTMHLNLVDLL 128
           LIT  K+V    +  + MHL + DLL
Sbjct: 61  LITCRKRVSKSRIHIMLMHLAIADLL 86


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 482 LTVLCHIISYLSIKNCAFHFGSGYKLFLC 396
           L V C  ISYLS+        SG K+ LC
Sbjct: 242 LIVPCVSISYLSVLAFYLPADSGEKIALC 270


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 113 LSGFTIRKEASTYVADQITSMTPHERRAILDK 208
           L G +  KEA T  +D+I  +T  E   I  K
Sbjct: 14  LRGTSEVKEAQTSTSDEIEKITTVEEEKICHK 45


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 316 TVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPK 426
           TV +     NIP +  D ++   ++S+   N    PK
Sbjct: 382 TVHSFPSTLNIPSVKIDEDQKCSIESITSVNSTSSPK 418


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 160 SNNFNDST*TTGNS*QVNFTHFKTMYF 240
           +NN+N++     N    N+ ++K +Y+
Sbjct: 93  NNNYNNNNYNNYNYNNNNYNNYKKLYY 119


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 531 FLLGPMKAGFLSKQFIPNSSLPYYFVSVYQ 442
           F L P +  FL K+F  N     YF++ Y+
Sbjct: 643 FDLEPRQKEFLPKEFPANIEGTSYFLNDYK 672


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 500 KKPAFIGPRRNISNCA 547
           K+P+FI PR  +  C+
Sbjct: 758 KRPSFISPRSQLIICS 773


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,467
Number of Sequences: 438
Number of extensions: 4429
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)