Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0106
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22110.1 68418.m02574 DNA polymerase epsilon subunit B family...    42   4e-04
At5g45275.1 68418.m05557 expressed protein Requires functional a...    30   1.7  
At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    29   2.2  
At3g58980.1 68416.m06574 F-box family protein contains two F-box...    29   3.9  
At3g58920.1 68416.m06566 F-box family protein contains F-box dom...    29   3.9  
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte...    28   5.2  

>At5g22110.1 68418.m02574 DNA polymerase epsilon subunit B family
           contains Pfam profile: PF04042 DNA polymerase epsilon
           subunit B
          Length = 523

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
 Frame = +1

Query: 238 FTARIRKEHLEIAFKECSASGLEETETV----LNVIDAFNIPKLSYDNERNKFVKSVHKN 405
           F +RI   +L    K   A    E  T     L +IDAF +PK  +D     +V      
Sbjct: 63  FLSRIILRNLTSILKSLGAHNAPEEPTTSASSLAIIDAFLVPKDEFDRWLRVYVWHTSSL 122

Query: 406 NLYPEPKWKAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLSSSSRID 585
            ++ E   K     +R+ ++ QR  R + F++ A    AE   F+  +I ++ S  S+  
Sbjct: 123 PIHGEASAKTALYRERFMLLSQRVSRAEHFSRPA--FDAEMSQFENNEISSIQSLISQRG 180

Query: 586 DVIVLGLLIQLTEGN 630
              V+G++ QL +G+
Sbjct: 181 RKWVMGVISQLEDGH 195


>At5g45275.1 68418.m05557 expressed protein Requires functional
           assignment.
          Length = 570

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 591 DCARSFNTVDRRKYYLEDPTGQCCSRYVT-NQV 686
           D  R+ NT D+ K ++ED  G CC++ +T NQ+
Sbjct: 306 DVVRAVNTPDQ-KSFIEDDDGCCCTKVITRNQL 337


>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 149 YVADQI-TSMTPHERRAILDKLTSHILKQCISQPVLGKNTWKSPSKNALHRVLKRP 313
           Y  ++I T  T H  +    KLTSH+      + V G   WK    N LHR+L  P
Sbjct: 347 YFREKICTKDTRHAHKPKAKKLTSHMFGMGCHKKVSGGGKWK--RDNDLHRLLFLP 400


>At3g58980.1 68416.m06574 F-box family protein contains two F-box
           domains Pfam:PF00646
          Length = 594

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 494 NNLFLTVLCHIISYLSIKNCAF 429
           +NL   ++CHI+S+LS K  AF
Sbjct: 5   SNLPNEIICHIVSFLSAKEAAF 26


>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 470

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 494 NNLFLTVLCHIISYLSIKNCAF 429
           +NL   ++CHI+S+LS K  AF
Sbjct: 5   SNLPNEIICHIVSFLSAKEAAF 26


>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
           protein, Arabidopsis thaliana
          Length = 632

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 268 EIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKN 405
           +I  K+CSA  L     VLN  D+ ++P     NE  K    +H++
Sbjct: 533 QIGLKDCSADSLPPYALVLNFADSGSVPSEEKLNEIFKRYGPLHES 578


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,772
Number of Sequences: 28952
Number of extensions: 305888
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)