Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0105
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   3.1  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   9.5  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   9.5  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   9.5  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   9.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.5  

>SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 558 DPAAIQIRGGMNELMWLYNDISINTFYIRXMLKDSNKDQKGI 433
           + A  QIRG M +L   ++   +   YIR ++ D+N D  G+
Sbjct: 75  EAATSQIRGLMKQLQCSFDQARL--IYIRKVMSDNNVDSTGM 114


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 284 ITILFKKILDR*WFGPKNRNQ*DRYLITVYYDVL*SRISIKST*IEKSLFSLI 126
           I  LF+K L R W     R+      +   Y ++ S I+IK+      LF++I
Sbjct: 167 IITLFQKKLSRVWTTSSERDMFLSLFLKPIYTLMESEINIKNASFRSRLFNII 219


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 164 LSIFWITIRRNTL*SSIDPIDSDFWDRTI-IDQEFF*IKLLSFIVSTQF 307
           LS F + +  NTL  SID +D    +  + +D +   I+++   V+T F
Sbjct: 204 LSCFLVVLLSNTLYDSIDELDFSVLNSIVSLDAKDIYIRVICSFVNTGF 252


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 207 DYSVLRRIVIQNIDKKHLDRKIPIFAYFSETA 112
           DY +LR ++++  D+     +I +  Y SETA
Sbjct: 426 DYDMLRDMMVKINDRHEFPLEIDLEPYLSETA 457


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 509 FTMTFQSIHFISGXC*KTVIKIKRGYLKKSNNIT*ATGFKSHFLCTL 369
           F M  + +  ISG       +++RG LKK   I    G+ SH   T+
Sbjct: 253 FLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIE-IVGYGSHLKTTV 298


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 395 NPWLTLYYYFSLDIPF 442
           NP+LT YY +  D+P+
Sbjct: 454 NPFLTNYYMYLADVPY 469


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 377 CTLNIIIQRLANVKKRFVTVLKNKT 303
           C +++   R ANV+  FV +LK+++
Sbjct: 99  CAIHVPCPRKANVQNNFVIILKSES 123


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -2

Query: 213 ILDYSVLRRIVIQNIDKKHLDRKIPIFAYFSETAKLGLIWNRSYVIV 73
           +L  S+L  I+   + K   + K+P   YF     L ++++   ++V
Sbjct: 463 LLALSILLSIISSFLVKHWRESKVPFLVYFLSAPSLAILYSCFIILV 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,175
Number of Sequences: 5004
Number of extensions: 56296
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)