Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0105
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857...    29   4.3  

>12_02_1159 +
           26585042-26585441,26585520-26585608,26585670-26585720,
           26586189-26586282,26586451-26586512,26586589-26586671,
           26586793-26586901,26587010-26587051,26587152-26587316,
           26588165-26588341,26588820-26588984,26589069-26589332
          Length = 566

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 213 ILDYSVLRRIVIQNIDKKH-LDRKIPIFAYFSETAKLGLIWNRSYVI 76
           IL +     +++Q+++ K  +++K+ I+ Y + T    L W  +YV+
Sbjct: 341 ILSFCTHNYLIVQDVELKDVIEKKLNIYCYCNPTVVGELTWGLNYVL 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,905
Number of Sequences: 37544
Number of extensions: 279639
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)