Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0105
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14330| Best HMM Match : Ferric_reduct (HMM E-Value=2.5)             28   7.6  

>SB_14330| Best HMM Match : Ferric_reduct (HMM E-Value=2.5)
          Length = 307

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 196 YTVIKYRSY*FRFLGPNHYRSRIFLNKIVIFYCINPVLFFSTVTKRFFTLANLCMIMFRV 375
           + V +  S  +R L P H   R+F+ +I    C N    F  +T +F  + NL  +  + 
Sbjct: 245 FVVSRLVSAVWRSLKPFHAFDRMFVYRISCVSCFNINNAFRNLTTKFTRIINLTKMPKKA 304

Query: 376 H 378
           H
Sbjct: 305 H 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,338,981
Number of Sequences: 59808
Number of extensions: 352314
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)