Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0105
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
           protein C16A3.3 protein.
          Length = 1743

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 147 FDLSAFYRYSGSQYVVIHCNQVSILLIPIFGTEPLSIKNFFK 272
           FD       +G+  V IH ++VS     +F  E + IKN F+
Sbjct: 83  FDDGVLLHTAGTHTVKIHASEVSKKFTELFNEEKIEIKNAFQ 124


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +1

Query: 241 PNHYRSRIFLNKIV---IFYCINPV----LFFSTVTKRFFTLANLCMIMFRVHRK*LLKP 399
           P H+ + + LN  V    F+ ++ +    +FF T  K+   +  +  IMF VHR   L P
Sbjct: 294 PKHFWNHLLLNAFVSVDTFFVLSGLVLTYMFFKTTPKKKMIVNPVTWIMFYVHRYLRLTP 353

Query: 400 VAYVILLLFFRY 435
              + +  F  Y
Sbjct: 354 PIMLFIGFFTVY 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,198
Number of Sequences: 27780
Number of extensions: 295638
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)