Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0105
(655 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.0
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 6.0
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 7.9
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 7.9
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 21 7.9
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 194 TLYYFFNLIVP 204
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 194 TLYYFFNLIVP 204
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 194 TLYYFFNLIVP 204
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 194 TLYYFFNLIVP 204
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 194 TLYYFFNLIVP 204
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 194 TLYYFFNLIVP 204
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 262 TLYYFFNLIVP 272
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 262 TLYYFFNLIVP 272
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 407 TLYYYFSLDIP 439
TLYY+F+L +P
Sbjct: 231 TLYYFFNLIVP 241
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 213 SILLIPIFGTEPLS 254
S++ +PI GTEP S
Sbjct: 48 SVMQLPIHGTEPRS 61
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 153 LSAFYRYSGSQYVVIHCNQVSILLIPIFGTEPLSI 257
LS Y Y+ + Y ++CN L I E + I
Sbjct: 85 LSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 153 LSAFYRYSGSQYVVIHCNQVSILLIPIFGTEPLSI 257
LS Y Y+ + Y ++CN L I E + I
Sbjct: 85 LSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.9
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +3
Query: 300 PSFVF*YSYKTFFYISQSLYDNVQGTQKMTL 392
P F + Y + Y+S + V GT + L
Sbjct: 221 PPFTYRYGFSFLLYVSGFITTEVAGTYAIFL 251
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,888
Number of Sequences: 438
Number of extensions: 4073
Number of successful extensions: 25
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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