Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0104
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   2.3  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   7.2  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 423 EKVLFLTFXXXXXXXXXGMAPSVGLISGATGLATAISSGVLP 298
           +KVLFLT           +  S  L+SGATGL   ++    P
Sbjct: 284 KKVLFLTKTSSASVLADFVLSSCALVSGATGLLQGLTRITFP 325


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
          family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 98 TVKILGKTGSTVCLFIFYHRS 36
          T++ +G    T+ LF+F+HRS
Sbjct: 35 TIRTVGIIALTLVLFLFFHRS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,845
Number of Sequences: 5004
Number of extensions: 54793
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)