Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0104
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    34   0.11 
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    29   3.2  
05_01_0475 - 3818121-3820565                                           29   4.2  
03_01_0031 + 292335-292844                                             29   4.2  
07_01_0288 - 2097361-2097855                                           28   7.4  
04_03_0910 + 20751014-20753437                                         28   7.4  

>02_04_0371 +
           22434710-22435102,22435428-22435624,22435707-22435824,
           22436458-22436574,22436702-22436803,22437431-22437487,
           22437976-22438044,22438423-22438533,22438597-22438791,
           22439023-22439121,22439656-22440222,22440344-22440568,
           22441036-22441338,22441640-22441707,22441947-22442105,
           22442230-22442475,22442549-22442680,22443243-22443351,
           22444131-22444283,22444359-22444601,22444695-22444862,
           22445013-22445156,22445238-22445699,22446495-22446791,
           22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 619 TCFPLAYSSIVNHFLAHAPLTHIVFHAXHPYLLRSTSPLCPCTFIVKTS 473
           +C P +Y  I  H   H P +H+V H     +    + LC C F  KTS
Sbjct: 691 SCSPSSYILIDAHPCRHDP-SHVVTHRIQATITEFAASLCQCNFQTKTS 738


>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 583 HFLAHAPLTHIVFHAXHPYLLR 518
           HF A  PL H  FH  HP+++R
Sbjct: 366 HFAASFPLWHRKFHWRHPWIIR 387


>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 9   IGFRYTTFCAAMVKYEQTNG*SGFP*YFNGILNKKKRFSVWVL*NYVKTISQVRSNERKF 188
           + FRY   C A   + +  G  GF   F G+L+     +       VK +   R  E++F
Sbjct: 499 VAFRYNDLCHATKNFSEKLGGGGFGSVFKGVLSDSTIIA-------VKKLDGARQGEKQF 551

Query: 189 R 191
           R
Sbjct: 552 R 552


>03_01_0031 + 292335-292844
          Length = 169

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 400 WFAWRRWRRRYGTFSRLDLRGYW 332
           W  WRRWRRR G   R   +  W
Sbjct: 36  WSEWRRWRRRRGWRRRWGWQRRW 58


>07_01_0288 - 2097361-2097855
          Length = 164

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 538 LRERQYV*EGREPRNGLR*RSMPGENMLRRRQVTWR 645
           LR+RQ+    R P  G+    + G+++LRRR + WR
Sbjct: 39  LRDRQH--RRRVPAAGVPVAGVRGDHVLRRRSLRWR 72


>04_03_0910 + 20751014-20753437
          Length = 807

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 9   IGFRYTTFCAAMVKYEQTNG*SGFP*YFNGILNKKKRFSVWVL*NYVKTISQVRS 173
           I FRY+    A   + +  G  GF   F G+LN     +V  L +Y +   Q R+
Sbjct: 494 IPFRYSDLQRATKNFSEQIGAGGFGSVFKGLLNGSTAIAVKRLVSYCQVEKQFRA 548


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,705
Number of Sequences: 37544
Number of extensions: 329096
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)