Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0104
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical
           protein M05D6.2 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 613 FPLAYSSIVNHFLAHAPLTHIVFHAXHP 530
           F   YS+++  F  H P TH ++ A  P
Sbjct: 414 FYAMYSNLIQEFQGHTPSTHAIYRADSP 441


>AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.6 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 601 YSSIVN-HFLAHAPLTHIVFHAXHPYLLRSTSPLCPCTFIVKTSI 470
           ++S+ N H L       I+F+   P +L+S +PLC C+ I  +S+
Sbjct: 35  FTSLPNGHLLKPCEEREILFYQKMPKILKSIAPLC-CSTIQGSSV 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,748,304
Number of Sequences: 27780
Number of extensions: 299331
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)