Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0103
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)           31   0.68 
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               30   2.1  
SB_23342| Best HMM Match : Activin_recp (HMM E-Value=6.2)              30   2.1  
SB_39134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)
          Length = 306

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 279 VSLLFVVITFVVINKFDEERPKSTESESSG--SDKTCF 172
           +S LF+VI  V +  F  E+ KS E+  S   SDK CF
Sbjct: 31  LSTLFLVIAIVFVGLFAYEKLKSAETSKSSPLSDKICF 68


>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 224 RGLKAPRVNPVDPTRHVSGEGGLALLRR--DQIRNRCLAGSSHLNSKYIQYNM*FLSSQR 51
           R +   R+N +DPTR V+GEG +   RR  DQ +      S  LN ++I  +   +S   
Sbjct: 68  RNMPPDRLN-IDPTRVVTGEGNMPSDRRHIDQSQPLTSEESMALNKRHIDQSKALISEGH 126

Query: 50  ILS 42
           I S
Sbjct: 127 IPS 129


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 279  VSLLFVVITFVVINKFDEERPKSTESESSGSDKTCFG---RRRACVAPSRSDKKQVSSGI 109
            +SLL   I+ +      E++  + E+E SG  K C G   RR +     + DKK+  S +
Sbjct: 852  ISLLAGCISGITSEVLTEQKAAAEETEESGERKDCKGCKERRESAEKNEKKDKKEKMSCV 911

Query: 108  L 106
            +
Sbjct: 912  V 912


>SB_23342| Best HMM Match : Activin_recp (HMM E-Value=6.2)
          Length = 199

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 279 VSLLFVVITFVVINKFDEERPKSTESESSGSDKTCFG---RRRACVAPSRSDKKQVSSGI 109
           +SLL   I+ +      E++  + E+E SG  K C G   RR +     + DKK+  S +
Sbjct: 93  ISLLAGCISGITSEVLTEQKAAAEETEESGERKDCKGCKERRESAEKNEKKDKKEKMSCV 152

Query: 108 L 106
           +
Sbjct: 153 V 153


>SB_39134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 227 RRGLKAPRVNPVDPTRHVSGEGGLALLRRDQI 132
           R G + P  +  DPT H S +  LA+  RD I
Sbjct: 92  RTGARLPDASTFDPTTHPSSKAMLAVFTRDNI 123


>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1391

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 276 SLLFVVITFVVINKFDEERPKSTESESSGSDKTCFGRRRACVAPSRSDKKQVSSGILS 103
           S + ++  F + NK+   + K  E+E+    K  FG  R C +   +D +Q+ SG  S
Sbjct: 430 SFMELLKDFSLANKYVTSKRKREENENPAEVKLSFGCSRDC-SSRETDDQQLDSGCSS 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,947,612
Number of Sequences: 59808
Number of extensions: 332688
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)