BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0103 (699 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8) 31 0.68 SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7) 30 2.1 SB_23342| Best HMM Match : Activin_recp (HMM E-Value=6.2) 30 2.1 SB_39134| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 >SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8) Length = 306 Score = 31.5 bits (68), Expect = 0.68 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -1 Query: 279 VSLLFVVITFVVINKFDEERPKSTESESSG--SDKTCF 172 +S LF+VI V + F E+ KS E+ S SDK CF Sbjct: 31 LSTLFLVIAIVFVGLFAYEKLKSAETSKSSPLSDKICF 68 >SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 908 Score = 30.3 bits (65), Expect = 1.6 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 224 RGLKAPRVNPVDPTRHVSGEGGLALLRR--DQIRNRCLAGSSHLNSKYIQYNM*FLSSQR 51 R + R+N +DPTR V+GEG + RR DQ + S LN ++I + +S Sbjct: 68 RNMPPDRLN-IDPTRVVTGEGNMPSDRRHIDQSQPLTSEESMALNKRHIDQSKALISEGH 126 Query: 50 ILS 42 I S Sbjct: 127 IPS 129 >SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7) Length = 2372 Score = 29.9 bits (64), Expect = 2.1 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = -1 Query: 279 VSLLFVVITFVVINKFDEERPKSTESESSGSDKTCFG---RRRACVAPSRSDKKQVSSGI 109 +SLL I+ + E++ + E+E SG K C G RR + + DKK+ S + Sbjct: 852 ISLLAGCISGITSEVLTEQKAAAEETEESGERKDCKGCKERRESAEKNEKKDKKEKMSCV 911 Query: 108 L 106 + Sbjct: 912 V 912 >SB_23342| Best HMM Match : Activin_recp (HMM E-Value=6.2) Length = 199 Score = 29.9 bits (64), Expect = 2.1 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = -1 Query: 279 VSLLFVVITFVVINKFDEERPKSTESESSGSDKTCFG---RRRACVAPSRSDKKQVSSGI 109 +SLL I+ + E++ + E+E SG K C G RR + + DKK+ S + Sbjct: 93 ISLLAGCISGITSEVLTEQKAAAEETEESGERKDCKGCKERRESAEKNEKKDKKEKMSCV 152 Query: 108 L 106 + Sbjct: 153 V 153 >SB_39134| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 187 Score = 29.1 bits (62), Expect = 3.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 227 RRGLKAPRVNPVDPTRHVSGEGGLALLRRDQI 132 R G + P + DPT H S + LA+ RD I Sbjct: 92 RTGARLPDASTFDPTTHPSSKAMLAVFTRDNI 123 >SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1391 Score = 28.7 bits (61), Expect = 4.8 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -1 Query: 276 SLLFVVITFVVINKFDEERPKSTESESSGSDKTCFGRRRACVAPSRSDKKQVSSGILS 103 S + ++ F + NK+ + K E+E+ K FG R C + +D +Q+ SG S Sbjct: 430 SFMELLKDFSLANKYVTSKRKREENENPAEVKLSFGCSRDC-SSRETDDQQLDSGCSS 486 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,947,612 Number of Sequences: 59808 Number of extensions: 332688 Number of successful extensions: 689 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 686 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -