Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0103
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical...    27   9.8  

>U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical
           protein F28H1.4b protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 550 VYCTTMT*TLYFKEIMDLV*NLNW-SCYLKYTFIFSPF 660
           ++ TT   TLY   ++D + ++NW  C + Y F ++ F
Sbjct: 82  IFVTTSLLTLYLFRVVDTLPSINWIVCEMVYCFAWTVF 119


>U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical
           protein F28H1.4a protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 550 VYCTTMT*TLYFKEIMDLV*NLNW-SCYLKYTFIFSPF 660
           ++ TT   TLY   ++D + ++NW  C + Y F ++ F
Sbjct: 162 IFVTTSLLTLYLFRVVDTLPSINWIVCEMVYCFAWTVF 199


>AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical
           protein F25E5.10 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 279 VSLLFVVITFVVINKFDEERPKSTESESSGSDKTCFGRRR 160
           VS LF ++ F+++     +  K +E E++   KTC  + R
Sbjct: 2   VSCLFSLVAFIILASSSVDAFKLSEEENAALQKTCGTKMR 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,819
Number of Sequences: 27780
Number of extensions: 252627
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)