Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0103
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15240.1 68417.m02336 fringe-related protein + weak similarit...    35   0.045
At5g49650.2 68418.m06145 xylulose kinase, putative similar to D-...    31   0.56 
At5g49650.1 68418.m06146 xylulose kinase, putative similar to D-...    31   0.56 
At3g26110.1 68416.m03252 expressed protein                             28   6.8  
At1g12380.1 68414.m01431 expressed protein                             27   9.0  

>At4g15240.1 68417.m02336 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 488

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -3

Query: 451 PKMLFPVRPNGLVSSRFRYQNFLTLALARVVFAVSTAGSESRPTENIQRETQRAVSIG*F 272
           P+MLFP +   L SSR R   FL L    +++ + + G+  R  E I     R++S+  F
Sbjct: 22  PEMLFPAKSPSLTSSRIR-NIFLLLIFCFIIYIIFSYGTNFR-REQIS-SIARSLSV--F 76

Query: 271 ALRRNHL 251
           + RR HL
Sbjct: 77  STRRRHL 83


>At5g49650.2 68418.m06145 xylulose kinase, putative similar to
           D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
          Length = 426

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 200 NPVDPTRH-VSGEGGLALLRRDQIRNRCLAGSSHLNSKYIQ 81
           NPVDP  + V      A L R++IR+RC  GS  + +KY+Q
Sbjct: 327 NPVDPESYMVMLVYKNASLTREEIRDRCAEGSWDVFNKYLQ 367


>At5g49650.1 68418.m06146 xylulose kinase, putative similar to
           D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
          Length = 558

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 200 NPVDPTRH-VSGEGGLALLRRDQIRNRCLAGSSHLNSKYIQ 81
           NPVDP  + V      A L R++IR+RC  GS  + +KY+Q
Sbjct: 327 NPVDPESYMVMLVYKNASLTREEIRDRCAEGSWDVFNKYLQ 367


>At3g26110.1 68416.m03252 expressed protein
          Length = 128

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -1

Query: 300 LSGLCL*VSLLFVVITFVVINKFDEERPKSTESESSGSDKT 178
           ++ L L + LLFV I+ V+++  + E+P ST + S+ +  T
Sbjct: 1   MARLHLALLLLFVAISAVIVSAAENEKPPSTTTASAPTATT 41


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 234 FDEERPKSTESESSGSDKTCF 172
           +D+ER +S  S SSGS+K CF
Sbjct: 461 YDDER-RSCSSSSSGSNKVCF 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,555,395
Number of Sequences: 28952
Number of extensions: 231470
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)