Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0101
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    28   1.2  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.7  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   3.7  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   5.0  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   6.5  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.7  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   8.7  

>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 262 VLADLEGPGAGSLAPLEPLAEFSAALGAGIGSSVSVTSRQEF 137
           V+   EGP  G   P E L   SA +GAG+G  V++ +   F
Sbjct: 470 VIIRFEGPKGGPGMP-EMLKPSSAIMGAGLGKDVALLTDGRF 510


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  FLQNYEVRVRLQQEDEENSWRLVTDT 164
           F  NY  R+R  +ED+ N W   +DT
Sbjct: 7   FSDNYLDRLRTVEEDDYNDWEGSSDT 32


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 307 GFVVIFLDYLHITVAVLADLEGPGAGSLAPLEP 209
           G +++FL  + +T  VL +L  PG+ S    +P
Sbjct: 50  GIIILFLYIMIVTCYVLTNLTPPGSPSETSFDP 82


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 12  ETEHNNDKTLEQIGLNDGCALLVDDFLQNYEVRVRLQQEDEE 137
           E E  N+  LEQ  +NDG A+  D+  +  E  + + +ED +
Sbjct: 338 EFEEANEDFLEQ-KVNDGSAIKADEIRKPQESPIFVDEEDTD 378


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 48  IGLNDGCALLVDDFLQNYEVRVRLQQEDEENSWR 149
           IG+N    L++D     Y+ RV+  + DE+ + R
Sbjct: 150 IGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTER 183


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 354 LSKYVNNLSSPF*HLVLAPIRRN 422
           L K  N  + PF HL  A IRRN
Sbjct: 657 LDKQANGYAQPFGHLKHAVIRRN 679


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 4   HEE--KLNTTMTKLWNKSA*MTAVHYLWMISYKTMKSGSD 117
           HE+  KL   +   WNKS  + + H L  + Y+T+K G D
Sbjct: 203 HEDLLKLLNGLRMWWNKSFKIES-HGLRKLGYRTLKQGFD 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,213
Number of Sequences: 5004
Number of extensions: 44402
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)